HL_28ZY_019

3D structure

PDB id

28ZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with mRNA (Kozak_2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCCGAGCCG

Length

9 nucleotides

Bulged bases

28ZY|1|S2|G|836, 28ZY|1|S2|G|838, 28ZY|1|S2|C|840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28ZY_019 not in the Motif Atlas

Homologous match to HL_9H3G_092

Geometric discrepancy: 0.5841

The information below is about HL_9H3G_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34080.1

Basepair signature

cWW-cWH-F

Number of instances in this motif group

4

Unit IDs

28ZY|1|S2|C|833
28ZY|1|S2|C|834
28ZY|1|S2|C|835
28ZY|1|S2|G|836
28ZY|1|S2|A|837
28ZY|1|S2|G|838
28ZY|1|S2|C|839
28ZY|1|S2|C|840
28ZY|1|S2|G|841

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SY

40S ribosomal protein S24