HL_28ZY_022

3D structure

PDB id

28ZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with mRNA (Kozak_2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28ZY_022 not in the Motif Atlas

Homologous match to HL_9H3G_094

Geometric discrepancy: 0.0756

The information below is about HL_9H3G_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

28ZY|1|S2|C|994
28ZY|1|S2|G|995
28ZY|1|S2|A|996
28ZY|1|S2|A|997
28ZY|1|S2|A|998
28ZY|1|S2|G|999

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SN

40S ribosomal protein S13

Chain Sa

40S ribosomal protein S26