HL_299D_001

3D structure

PDB id

299D (explore in PDB, NAKB, or RNA 3D Hub)

Description

CAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: THE HAMMERHEAD RIBOZYME

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_299D_001 not in the Motif Atlas

Geometric match to HL_4QK9_002

Geometric discrepancy: 0.1164

The information below is about HL_4QK9_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

299D|1|B|C|154
299D|1|B|G|31|||L
299D|1|B|U|32|||L
299D|1|B|A|33|||L
299D|1|B|A|34|||L
299D|1|B|G|164

Current chains

Chain B

RNA HAMMERHEAD RIBOZYME

Nearby chains

Chain A

RNA HAMMERHEAD RIBOZYME