HL_2A9L_001

3D structure

PDB id

2A9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

SOLUTION NMR STRUCTURE OF A SUBSTRATE FOR THE ARCHAEAL PRE-TRNA SPLICING ENDONUCLEASES: THE BULGE-HELIX-BULGE MOTIF, MINIMIZED AVERAGE STRUCTURE

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2A9L_001 not in the Motif Atlas

Geometric match to HL_5VSU_001

Geometric discrepancy: 0.289

The information below is about HL_5VSU_001

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

2A9L|1|A|C|17
2A9L|1|A|G|18
2A9L|1|A|A|19
2A9L|1|A|G|20
2A9L|1|A|A|21
2A9L|1|A|G|22

Current chains

Chain A

ABISS7 RNA

Nearby chains