HL_2B2G_001

3D structure

PDB id

2B2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

MS2 Wild-type RNA stemloop complexed with an N87S mutant MS2 capsid

Experimental method

X-RAY DIFFRACTION

Resolution

3.02 Å

Loop

Sequence

GAUUAC

Length

6 nucleotides

Bulged bases

2B2G|1|R|U|309||||P_1, 2B2G|1|R|A|311||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2B2G_001 not in the Motif Atlas

Geometric match to HL_5MSF_001

Geometric discrepancy: 0.0993

The information below is about HL_5MSF_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

2B2G|1|R|G|307||||P_1
2B2G|1|R|A|308||||P_1
2B2G|1|R|U|309||||P_1
2B2G|1|R|U|310||||P_1
2B2G|1|R|A|311||||P_1
2B2G|1|R|C|312||||P_1

Current chains

Chain R

5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*UP*GP*U)-3'

Nearby chains

Chain A

Coat protein

Chain B

Coat protein

Chain C

Coat protein