HL_2BS1_001

3D structure

PDB id

2BS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MS2 (N87AE89K mutant) - Qbeta RNA hairpin complex

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAAG

Length

5 nucleotides

Bulged bases

2BS1|1|R|U|10||||P_1, 2BS1|1|R|A|12||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2BS1_001 not in the Motif Atlas

Geometric match to HL_4LFB_018

Geometric discrepancy: 0.223

The information below is about HL_4LFB_018

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.4

Basepair signature

cWW-F

Number of instances in this motif group

48

Unit IDs

2BS1|1|R|C|9||||P_1
2BS1|1|R|U|10||||P_1
2BS1|1|R|A|11||||P_1
2BS1|1|R|A|12||||P_1
2BS1|1|R|G|13||||P_1

Current chains

Chain R

5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3'

Nearby chains

Chain A

MS2 COAT PROTEIN

Chain B

MS2 COAT PROTEIN

Chain C

MS2 COAT PROTEIN