HL_2C4Q_001

3D structure

PDB id

2C4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

MS2-RNA HAIRPIN (2ONE -5) COMPLEX

Experimental method

X-RAY DIFFRACTION

Resolution

2.38 Å

Loop

Sequence

GAU(PYO)AC

Length

6 nucleotides

Bulged bases

2C4Q|1|R|U|10||||P_1, 2C4Q|1|R|A|12||||P_1

QA status

Modified nucleotides: PYO

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

2C4Q|1|R|G|8||||P_1
2C4Q|1|R|A|9||||P_1
2C4Q|1|R|U|10||||P_1
2C4Q|1|R|PYO|11||||P_1
2C4Q|1|R|A|12||||P_1
2C4Q|1|R|C|13||||P_1

Current chains

Chain R

5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *PYO*AP*CP*CP*CP*AP*UP*GP*U)-3'

Nearby chains

Chain A

COAT PROTEIN

Chain B

COAT PROTEIN

Chain C

COAT PROTEIN