HL_2CV0_003

3D structure

PDB id

2CV0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glutamyl-tRNA synthetase from Thermus thermophilus in complex with tRNA(Glu) and L-glutamate

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2CV0_003 not in the Motif Atlas

Geometric match to HL_1N78_003

Geometric discrepancy: 0.1027

The information below is about HL_1N78_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

2CV0|1|C|G|553
2CV0|1|C|U|554
2CV0|1|C|U|555
2CV0|1|C|C|556
2CV0|1|C|G|557
2CV0|1|C|A|558
2CV0|1|C|U|559
2CV0|1|C|U|560
2CV0|1|C|C|561

Current chains

Chain C

tRNA

Nearby chains