HL_2D3O_007

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

AGAAUU

Length

6 nucleotides

Bulged bases

2D3O|1|0|A|205, 2D3O|1|0|U|206

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2D3O_007 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.3015

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

2D3O|1|0|A|202
2D3O|1|0|G|203
2D3O|1|0|A|204
2D3O|1|0|A|205
2D3O|1|0|U|206
2D3O|1|0|U|207

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains