HL_2D3O_012

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GUUCGUGAAAC

Length

11 nucleotides

Bulged bases

2D3O|1|0|G|399, 2D3O|1|0|U|400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2D3O_012 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.4096

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

2D3O|1|0|G|395
2D3O|1|0|U|396
2D3O|1|0|U|397
2D3O|1|0|C|398
2D3O|1|0|G|399
2D3O|1|0|U|400
2D3O|1|0|G|401
2D3O|1|0|A|402
2D3O|1|0|A|403
2D3O|1|0|A|404
2D3O|1|0|C|405

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains