HL_2D3O_017

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

2D3O|1|0|C|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2D3O_017 not in the Motif Atlas

Homologous match to HL_7A0S_018

Geometric discrepancy: 0.2137

The information below is about HL_7A0S_018

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

2D3O|1|0|U|575
2D3O|1|0|A|576
2D3O|1|0|U|577
2D3O|1|0|U|578
2D3O|1|0|G|579
2D3O|1|0|A|580
2D3O|1|0|A|581
2D3O|1|0|G|582
2D3O|1|0|C|583
2D3O|1|0|A|584

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains