HL_2D3O_028

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

2D3O|1|0|U|1077, 2D3O|1|0|A|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2D3O_028 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.568

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

2D3O|1|0|C|1075
2D3O|1|0|U|1076
2D3O|1|0|U|1077
2D3O|1|0|A|1078
2D3O|1|0|G|1079
2D3O|1|0|A|1080
2D3O|1|0|A|1081
2D3O|1|0|G|1082
2D3O|1|0|C|1083
2D3O|1|0|A|1084
2D3O|1|0|G|1085

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains