HL_2D3O_032

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2D3O_032 not in the Motif Atlas

Homologous match to HL_4WF9_032

Geometric discrepancy: 0.182

The information below is about HL_4WF9_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

2D3O|1|0|G|1294
2D3O|1|0|U|1295
2D3O|1|0|G|1296
2D3O|1|0|A|1297
2D3O|1|0|G|1298
2D3O|1|0|A|1299
2D3O|1|0|A|1300
2D3O|1|0|U|1301
2D3O|1|0|C|1302

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains