HL_2D3O_035

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GGUCAAGAUUCC

Length

12 nucleotides

Bulged bases

2D3O|1|0|U|1409

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2D3O_035 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3717

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

2D3O|1|0|G|1401
2D3O|1|0|G|1402
2D3O|1|0|U|1403
2D3O|1|0|C|1404
2D3O|1|0|A|1405
2D3O|1|0|A|1406
2D3O|1|0|G|1407
2D3O|1|0|A|1408
2D3O|1|0|U|1409
2D3O|1|0|U|1410
2D3O|1|0|C|1411
2D3O|1|0|C|1412

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 1

Trigger Factor

Chain R

50S RIBOSOMAL PROTEIN L23