HL_2D3O_036

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUAUGGCUAUG

Length

11 nucleotides

Bulged bases

2D3O|1|0|A|1468, 2D3O|1|0|U|1475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2D3O_036 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.3126

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_00824.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

2D3O|1|0|C|1466
2D3O|1|0|U|1467
2D3O|1|0|A|1468
2D3O|1|0|U|1469
2D3O|1|0|G|1470
2D3O|1|0|G|1471
2D3O|1|0|C|1472
2D3O|1|0|U|1473
2D3O|1|0|A|1474
2D3O|1|0|U|1475
2D3O|1|0|G|1476

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains