HL_2D3O_037

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GAAAAUC

Length

7 nucleotides

Bulged bases

2D3O|1|0|U|1513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2D3O_037 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.341

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

2D3O|1|0|G|1508
2D3O|1|0|A|1509
2D3O|1|0|A|1510
2D3O|1|0|A|1511
2D3O|1|0|A|1512
2D3O|1|0|U|1513
2D3O|1|0|C|1514

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains