HL_2D3O_038

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

2D3O|1|0|U|1551

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2D3O_038 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.2447

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

2D3O|1|0|C|1549
2D3O|1|0|C|1550
2D3O|1|0|U|1551
2D3O|1|0|C|1552
2D3O|1|0|G|1553
2D3O|1|0|G|1554

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains