HL_2D3O_049

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

2D3O|1|0|U|1938

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2D3O_049 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.2103

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

2D3O|1|0|G|1932
2D3O|1|0|G|1933
2D3O|1|0|U|1934
2D3O|1|0|A|1935
2D3O|1|0|A|1936
2D3O|1|0|G|1937
2D3O|1|0|U|1938
2D3O|1|0|U|1939
2D3O|1|0|C|1940

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains