HL_2D3O_051

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CCUUUUGGGG

Length

10 nucleotides

Bulged bases

2D3O|1|0|U|2127, 2D3O|1|0|U|2128, 2D3O|1|0|U|2129

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2D3O|1|0|C|2124
2D3O|1|0|C|2125
2D3O|1|0|U|2126
2D3O|1|0|U|2127
2D3O|1|0|U|2128
2D3O|1|0|U|2129
2D3O|1|0|G|2130
2D3O|1|0|G|2131
2D3O|1|0|G|2132
2D3O|1|0|G|2133

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains