HL_2D3O_053

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

2D3O|1|0|G|2229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2D3O_053 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1823

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

2D3O|1|0|C|2227
2D3O|1|0|U|2228
2D3O|1|0|G|2229
2D3O|1|0|G|2230
2D3O|1|0|G|2231
2D3O|1|0|G|2232
2D3O|1|0|C|2233
2D3O|1|0|G|2234
2D3O|1|0|G|2235

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains