HL_2D3O_057

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUGACACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2D3O_057 not in the Motif Atlas

Homologous match to HL_7A0S_056

Geometric discrepancy: 0.1511

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

2D3O|1|0|C|2334
2D3O|1|0|U|2335
2D3O|1|0|G|2336
2D3O|1|0|A|2337
2D3O|1|0|C|2338
2D3O|1|0|A|2339
2D3O|1|0|C|2340
2D3O|1|0|G|2341

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains