HL_2DLC_003

3D structure

PDB id

2DLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the ternary complex of yeast tyrosyl-tRNA synthetase

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

G(5MU)(PSU)CG(1MA)CUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU, 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.7

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

2DLC|1|Y|G|553
2DLC|1|Y|5MU|554
2DLC|1|Y|PSU|555
2DLC|1|Y|C|556
2DLC|1|Y|G|557
2DLC|1|Y|1MA|558
2DLC|1|Y|C|559
2DLC|1|Y|U|560
2DLC|1|Y|C|561

Current chains

Chain Y

T-RNA (76-MER)

Nearby chains