HL_2DLC_006

3D structure

PDB id

2DLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the ternary complex of yeast tyrosyl-tRNA synthetase

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

G(5MU)(PSU)CG(1MA)CUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU, 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2DLC_006 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1414

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

2DLC|1|Y|G|553||||7_556
2DLC|1|Y|5MU|554||||7_556
2DLC|1|Y|PSU|555||||7_556
2DLC|1|Y|C|556||||7_556
2DLC|1|Y|G|557||||7_556
2DLC|1|Y|1MA|558||||7_556
2DLC|1|Y|C|559||||7_556
2DLC|1|Y|U|560||||7_556
2DLC|1|Y|C|561||||7_556

Current chains

Chain Y

T-RNA (76-MER)

Nearby chains