HL_2DU4_001

3D structure

PDB id

2DU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase complexed with tRNACys

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AGAGGGGCUUU

Length

11 nucleotides

Bulged bases

2DU4|1|C|G|917, 2DU4|1|C|G|918

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2DU4_001 not in the Motif Atlas

Geometric match to HL_2DU3_001

Geometric discrepancy: 0.1411

The information below is about HL_2DU3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34964.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

2DU4|1|C|A|912
2DU4|1|C|G|913
2DU4|1|C|A|914
2DU4|1|C|G|915
2DU4|1|C|G|916
2DU4|1|C|G|917
2DU4|1|C|G|918
2DU4|1|C|C|919
2DU4|1|C|U|920
2DU4|1|C|U|921
2DU4|1|C|U|922

Current chains

Chain C

tRNA

Nearby chains

Chain A

O-phosphoseryl-tRNA synthetase