HL_2DU4_003

3D structure

PDB id

2DU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase complexed with tRNACys

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUUCGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2DU4_003 not in the Motif Atlas

Geometric match to HL_2DU3_003

Geometric discrepancy: 0.0762

The information below is about HL_2DU3_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

2DU4|1|C|G|952
2DU4|1|C|U|953
2DU4|1|C|U|954
2DU4|1|C|C|955
2DU4|1|C|G|956
2DU4|1|C|A|957
2DU4|1|C|A|958
2DU4|1|C|U|959
2DU4|1|C|C|960

Current chains

Chain C

tRNA

Nearby chains