HL_2DU5_001
3D structure
- PDB id
- 2DU5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase E418N/E420N mutant complexed with tRNAOpal and O-phosphoserine ('opal complex')
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- AGAGGGGCUUU
- Length
- 11 nucleotides
- Bulged bases
- 2DU5|1|D|G|917, 2DU5|1|D|G|918
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_2DU5_001 not in the Motif Atlas
- Geometric match to HL_2DU3_001
- Geometric discrepancy: 0.1596
- The information below is about HL_2DU3_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34964.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
2DU5|1|D|A|912
2DU5|1|D|G|913
2DU5|1|D|A|914
2DU5|1|D|G|915
2DU5|1|D|G|916
2DU5|1|D|G|917
2DU5|1|D|G|918
2DU5|1|D|C|919
2DU5|1|D|U|920
2DU5|1|D|U|921
2DU5|1|D|U|922
Current chains
- Chain D
- tRNA
Nearby chains
- Chain A
- O-phosphoseryl-tRNA synthetase
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