HL_2DU5_006
3D structure
- PDB id
- 2DU5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase E418N/E420N mutant complexed with tRNAOpal and O-phosphoserine ('opal complex')
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GUUCGAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_2DU5_006 not in the Motif Atlas
- Geometric match to HL_2DU3_003
- Geometric discrepancy: 0.1384
- The information below is about HL_2DU3_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
2DU5|1|D|G|952||||4_555
2DU5|1|D|U|953||||4_555
2DU5|1|D|U|954||||4_555
2DU5|1|D|C|955||||4_555
2DU5|1|D|G|956||||4_555
2DU5|1|D|A|957||||4_555
2DU5|1|D|A|958||||4_555
2DU5|1|D|U|959||||4_555
2DU5|1|D|C|960||||4_555
Current chains
- Chain D
- tRNA
Nearby chains
No other chains within 10ÅColoring options: