3D structure

PDB id
2DU5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase E418N/E420N mutant complexed with tRNAOpal and O-phosphoserine ('opal complex')
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GUUCGAAUC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_2DU5_006 not in the Motif Atlas
Geometric match to HL_2DU3_003
Geometric discrepancy: 0.1384
The information below is about HL_2DU3_003
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.8
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
140

Unit IDs

2DU5|1|D|G|952||||4_555
2DU5|1|D|U|953||||4_555
2DU5|1|D|U|954||||4_555
2DU5|1|D|C|955||||4_555
2DU5|1|D|G|956||||4_555
2DU5|1|D|A|957||||4_555
2DU5|1|D|A|958||||4_555
2DU5|1|D|U|959||||4_555
2DU5|1|D|C|960||||4_555

Current chains

Chain D
tRNA

Nearby chains

No other chains within 10Å

Coloring options:


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