HL_2E5L_019

3D structure

PDB id

2E5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

A snapshot of the 30S ribosomal subunit capturing mRNA via the Shine- Dalgarno interaction

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2E5L_019 not in the Motif Atlas

Homologous match to HL_4LFB_019

Geometric discrepancy: 0.1094

The information below is about HL_4LFB_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

2E5L|1|A|C|862
2E5L|1|A|U|863
2E5L|1|A|A|864
2E5L|1|A|A|865
2E5L|1|A|C|866
2E5L|1|A|G|867

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 1

5'-R(*GP*AP*AP*AP*GP*A)-3'

Chain E

30S ribosomal protein S5

Chain H

30S ribosomal protein S8