HL_2ESE_006

3D structure

PDB id

2ESE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SAM domain of Vts1p in complex with RNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUGG

Length

4 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ESE_006 not in the Motif Atlas

Geometric match to HL_5U30_001

Geometric discrepancy: 0.1553

The information below is about HL_5U30_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

2ESE|6|B|C|533
2ESE|6|B|U|534
2ESE|6|B|G|535
2ESE|6|B|G|536

Current chains

Chain B

5'-R(*GP*GP*AP*GP*AP*GP*GP*CP*UP*CP*UP*GP*GP*CP*AP*GP*CP*UP*UP*UP*UP*CP*C)-3'

Nearby chains

Chain A

Vts1p