HL_2F4V_026

3D structure

PDB id

2F4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosome + designer antibiotic

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGUUCGGCC

Length

9 nucleotides

Bulged bases

2F4V|1|A|U|1136, 2F4V|1|A|C|1137, 2F4V|1|A|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2F4V_026 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.322

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

2F4V|1|A|G|1133
2F4V|1|A|G|1134
2F4V|1|A|U|1135
2F4V|1|A|U|1136
2F4V|1|A|C|1137
2F4V|1|A|G|1138
2F4V|1|A|G|1139
2F4V|1|A|C|1140
2F4V|1|A|C|1141

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S9