HL_2F87_003

3D structure

PDB id

2F87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of a GAAG tetraloop in SRP RNA from Pyrococcus furiosus

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2F87_003 not in the Motif Atlas

Geometric match to HL_4V9F_045

Geometric discrepancy: 0.1455

The information below is about HL_4V9F_045

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

2F87|3|A|U|4
2F87|3|A|G|5
2F87|3|A|A|6
2F87|3|A|A|7
2F87|3|A|G|8
2F87|3|A|G|9

Current chains

Chain A

SRP RNA

Nearby chains