HL_2F8K_001

3D structure

PDB id

2F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Sequence specific recognition of RNA hairpins by the SAM domain of Vts1

Experimental method

X-RAY DIFFRACTION

Resolution

2 Å

Loop

Sequence

UUGA

Length

4 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38927.6

Basepair signature

cWW-F

Number of instances in this motif group

34

Unit IDs

2F8K|1|B|U|6
2F8K|1|B|U|7
2F8K|1|B|G|8
2F8K|1|B|A|9

Current chains

Chain B

5'-R(*UP*AP*AP*UP*CP*UP*UP*UP*GP*AP*CP*AP*GP*AP*UP*U)-3'

Nearby chains

Chain A

Protein VTS1