HL_2FCX_001
3D structure
- PDB id
- 2FCX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- HIV-1 DIS kissing-loop in complex with neamine
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2 Å
Loop
- Sequence
- GAAGUGCACAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_2FCX_001 not in the Motif Atlas
- Geometric match to HL_3IGI_005
- Geometric discrepancy: 0.3223
- The information below is about HL_3IGI_005
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_52651.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 27
Unit IDs
2FCX|1|A|G|7
2FCX|1|A|A|8
2FCX|1|A|A|9
2FCX|1|A|G|10
2FCX|1|A|U|11
2FCX|1|A|G|12
2FCX|1|A|C|13
2FCX|1|A|A|14
2FCX|1|A|C|15
2FCX|1|A|A|16
2FCX|1|A|C|17
Current chains
- Chain A
- HIV-1 DIS RNA
Nearby chains
- Chain B
- HIV-1 DIS RNA
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