HL_2FK6_004

3D structure

PDB id

2FK6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of RNAse Z/tRNA(Thr) complex

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUUCGAGCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2FK6_004 not in the Motif Atlas

Geometric match to HL_1J1U_003

Geometric discrepancy: 0.0869

The information below is about HL_1J1U_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

2FK6|1|R|G|53||||2_756
2FK6|1|R|U|54||||2_756
2FK6|1|R|U|55||||2_756
2FK6|1|R|C|56||||2_756
2FK6|1|R|G|57||||2_756
2FK6|1|R|A|58||||2_756
2FK6|1|R|G|59||||2_756
2FK6|1|R|C|60||||2_756
2FK6|1|R|C|61||||2_756

Current chains

Chain R

TRNA(THR)

Nearby chains

Chain A

RIBONUCLEASE Z