HL_2FY1_009

3D structure

PDB id

2FY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A dual mode of RNA recognition by the RBMY protein

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CCACAAG

Length

7 nucleotides

Bulged bases

2FY1|9|B|C|119, 2FY1|9|B|A|120, 2FY1|9|B|A|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2FY1_009 not in the Motif Atlas

Geometric match to HL_6DTD_001

Geometric discrepancy: 0.2628

The information below is about HL_6DTD_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

2FY1|9|B|C|116
2FY1|9|B|C|117
2FY1|9|B|A|118
2FY1|9|B|C|119
2FY1|9|B|A|120
2FY1|9|B|A|121
2FY1|9|B|G|122

Current chains

Chain B

S1A stem-loop RNA

Nearby chains

Chain A

RNA-binding motif protein, Y chromosome, family 1 member A1