HL_2GIO_007

3D structure

PDB id

2GIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution Structure of a portion of the 5'UTR of HspA mRNA of Bradyrhizobium japonicum

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

2GIO|7|A|U|15

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2GIO_007 not in the Motif Atlas

Geometric match to HL_6DME_002

Geometric discrepancy: 0.2774

The information below is about HL_6DME_002

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_58375.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

2GIO|7|A|C|13
2GIO|7|A|U|14
2GIO|7|A|U|15
2GIO|7|A|C|16
2GIO|7|A|G|17
2GIO|7|A|G|18

Current chains

Chain A

29-MER

Nearby chains