HL_2GVO_011

3D structure

PDB id

2GVO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of a purine rich hexaloop hairpin belonging to PGY/MDR1 mRNA and targeted by antisense oligonucleotides

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CGGGAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2GVO_011 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.3623

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

2GVO|11|A|C|6
2GVO|11|A|G|7
2GVO|11|A|G|8
2GVO|11|A|G|9
2GVO|11|A|A|10
2GVO|11|A|U|11
2GVO|11|A|G|12
2GVO|11|A|G|13

Current chains

Chain A

GUANOSINE-5'-MONOPHOSPHATE

Nearby chains