HL_2HHH_004

3D structure

PDB id

2HHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of kasugamycin bound to the 30S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CCUUGG

Length

6 nucleotides

Bulged bases

2HHH|1|A|U|190, 2HHH|1|A|G|191

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2HHH_004 not in the Motif Atlas

Homologous match to HL_4LFB_004

Geometric discrepancy: 0.1374

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

2HHH|1|A|C|187
2HHH|1|A|C|188
2HHH|1|A|U|189
2HHH|1|A|U|190
2HHH|1|A|G|191
2HHH|1|A|G|192

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Q

30S ribosomal protein S17