HL_2HHH_008

3D structure

PDB id

2HHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of kasugamycin bound to the 30S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2HHH_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0832

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

2HHH|1|A|C|316
2HHH|1|A|A|317
2HHH|1|A|C|318
2HHH|1|A|U|319
2HHH|1|A|G|320
2HHH|1|A|A|321
2HHH|1|A|G|322
2HHH|1|A|A|323
2HHH|1|A|C|324
2HHH|1|A|A|325
2HHH|1|A|C|326
2HHH|1|A|G|327
2HHH|1|A|G|328
2HHH|1|A|G|329

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20