HL_2HO6_003

3D structure

PDB id

2HO6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUUCCUGCG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2HO6_003 not in the Motif Atlas

Geometric match to HL_3DIL_002

Geometric discrepancy: 0.3437

The information below is about HL_3DIL_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

2HO6|1|B|C|78
2HO6|1|B|U|79
2HO6|1|B|U|80
2HO6|1|B|C|81
2HO6|1|B|C|82
2HO6|1|B|U|83
2HO6|1|B|G|84
2HO6|1|B|C|85
2HO6|1|B|G|86

Current chains

Chain B

glmS ribozyme RNA

Nearby chains