HL_2HO6_004

3D structure

PDB id

2HO6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGCGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2HO6_004 not in the Motif Atlas

Geometric match to HL_2Z75_004

Geometric discrepancy: 0.0407

The information below is about HL_2Z75_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

2HO6|1|B|G|113
2HO6|1|B|G|114
2HO6|1|B|C|115
2HO6|1|B|G|116
2HO6|1|B|A|117
2HO6|1|B|C|118

Current chains

Chain B

glmS ribozyme RNA

Nearby chains

Chain A

glmS ribozyme substrate RNA