HL_2IL9_002

3D structure

PDB id

2IL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Plautia Stali Intestine Virus Intergenic Region Internal Ribosome Entry Site Ribosomal Binding Domain RNA at 3.1 Angstroms

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUGCGAAAGCUUACCACACAAGAUG

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2IL9|1|A|U|6082
2IL9|1|A|U|6083
2IL9|1|A|G|6084
2IL9|1|A|C|6084|||A
2IL9|1|A|G|6084|||B
2IL9|1|A|A|6084|||C
2IL9|1|A|A|6084|||D
2IL9|1|A|A|6084|||E
2IL9|1|A|G|6084|||F
2IL9|1|A|C|6095
2IL9|1|A|U|6096
2IL9|1|A|U|6097
2IL9|1|A|A|6098
2IL9|1|A|C|6099
2IL9|1|A|C|6100
2IL9|1|A|A|6101
2IL9|1|A|C|6102
2IL9|1|A|A|6103
2IL9|1|A|C|6104
2IL9|1|A|A|6105
2IL9|1|A|A|6106
2IL9|1|A|G|6107
2IL9|1|A|A|6108
2IL9|1|A|U|6109
2IL9|1|A|G|6110

Current chains

Chain A

Ribosomal Binding Domain of the IRES RNA

Nearby chains

Chain M

Ribosomal Binding Domain of the IRES RNA