HL_2IL9_004
3D structure
- PDB id
- 2IL9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Plautia Stali Intestine Virus Intergenic Region Internal Ribosome Entry Site Ribosomal Binding Domain RNA at 3.1 Angstroms
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AGGUUAAAUCGAGGUUAAAAAU
- Length
- 22 nucleotides
- Bulged bases
- 2IL9|1|M|U|6036
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_58667.1
- Basepair signature
- Not available
- Number of instances in this motif group
- 1
Unit IDs
2IL9|1|M|A|6028
2IL9|1|M|G|6029
2IL9|1|M|G|6030
2IL9|1|M|U|6031
2IL9|1|M|U|6032
2IL9|1|M|A|6033
2IL9|1|M|A|6034
2IL9|1|M|A|6035
2IL9|1|M|U|6036
2IL9|1|M|C|6039
2IL9|1|M|G|6040
2IL9|1|M|A|6041
2IL9|1|M|G|6042
2IL9|1|M|G|6043
2IL9|1|M|U|6044
2IL9|1|M|U|6045
2IL9|1|M|A|6046
2IL9|1|M|A|6047
2IL9|1|M|A|6048
2IL9|1|M|A|6049
2IL9|1|M|A|6050
2IL9|1|M|U|6051
Current chains
- Chain M
- Ribosomal Binding Domain of the IRES RNA
Nearby chains
- Chain A
- Ribosomal Binding Domain of the IRES RNA
Coloring options: