HL_2IL9_008

3D structure

PDB id

2IL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Plautia Stali Intestine Virus Intergenic Region Internal Ribosome Entry Site Ribosomal Binding Domain RNA at 3.1 Angstroms

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2IL9_008 not in the Motif Atlas

Geometric match to HL_3PDR_001

Geometric discrepancy: 0.1676

The information below is about HL_3PDR_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

2IL9|1|M|C|6119
2IL9|1|M|G|6119|||A
2IL9|1|M|A|6119|||B
2IL9|1|M|A|6119|||C
2IL9|1|M|A|6119|||D
2IL9|1|M|G|6119|||E

Current chains

Chain M

Ribosomal Binding Domain of the IRES RNA

Nearby chains