HL_2IY5_001

3D structure

PDB id

2IY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

PHENYLALANYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS complexed with tRNA and a phenylalanyl-adenylate analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAGUUGGUAG

Length

10 nucleotides

Bulged bases

2IY5|1|T|U|16, 2IY5|1|T|U|17, 2IY5|1|T|A|21

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2IY5_001 not in the Motif Atlas

Homologous match to HL_7UQ6_001

Geometric discrepancy: 0.4701

The information below is about HL_7UQ6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

2IY5|1|T|C|13
2IY5|1|T|A|14
2IY5|1|T|G|15
2IY5|1|T|U|16
2IY5|1|T|U|17
2IY5|1|T|G|18
2IY5|1|T|G|19
2IY5|1|T|U|20
2IY5|1|T|A|21
2IY5|1|T|G|22

Current chains

Chain T

TRNAPHE

Nearby chains

Chain A

PHENYLALANYL-TRNA SYNTHETASE ALPHA CHAIN

Chain B

PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN