HL_2IZ9_002

3D structure

PDB id

2IZ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MS2-RNA HAIRPIN (4ONE -5) COMPLEX

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GAU(ONE)AC

Length

6 nucleotides

Bulged bases

2IZ9|1|S|A|12||||P_1

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2IZ9_002 not in the Motif Atlas

Geometric match to HL_5UD5_001

Geometric discrepancy: 0.1827

The information below is about HL_5UD5_001

Detailed Annotation

tRNA D-loop

Broad Annotation

tRNA D-loop

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

2IZ9|1|S|G|8||||P_1
2IZ9|1|S|A|9||||P_1
2IZ9|1|S|U|10||||P_1
2IZ9|1|S|ONE|11||||P_1
2IZ9|1|S|A|12||||P_1
2IZ9|1|S|C|13||||P_1

Current chains

Chain S

5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*U ONEP *AP*CP*CP*CP*AP*UP*GP*U)-3'

Nearby chains

Chain C

MS2 COAT PROTEIN