HL_2JL7_034

3D structure

PDB id

2JL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 3 of 4). This file contains the 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2JL7_034 not in the Motif Atlas

Geometric match to HL_4LCK_003

Geometric discrepancy: 0.1052

The information below is about HL_4LCK_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

2JL7|1|V|G|53
2JL7|1|V|U|54
2JL7|1|V|U|55
2JL7|1|V|C|56
2JL7|1|V|G|57
2JL7|1|V|A|58
2JL7|1|V|U|59
2JL7|1|V|U|60
2JL7|1|V|C|61

Current chains

Chain V

E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)

Nearby chains