HL_2JL8_006

3D structure

PDB id

2JL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 4 of 4). This file contains the 50S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

2JL8|1|A|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2JL8_006 not in the Motif Atlas

Geometric match to HL_5J7L_139

Geometric discrepancy: 0.0718

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

2JL8|1|A|G|194
2JL8|1|A|A|195
2JL8|1|A|A|196
2JL8|1|A|A|197
2JL8|1|A|C|198
2JL8|1|A|A|199
2JL8|1|A|U|200
2JL8|1|A|C|201

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain 1

50S RIBOSOMAL PROTEIN L28

Chain P

50S RIBOSOMAL PROTEIN L15