HL_2JL8_042

3D structure

PDB id

2JL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 4 of 4). This file contains the 50S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

2JL8|1|A|A|1614, 2JL8|1|A|A|1616, 2JL8|1|A|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2JL8_042 not in the Motif Atlas

Geometric match to HL_7RQB_040

Geometric discrepancy: 0.0828

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

2JL8|1|A|C|1612
2JL8|1|A|G|1613
2JL8|1|A|A|1614
2JL8|1|A|C|1615
2JL8|1|A|A|1616
2JL8|1|A|C|1617
2JL8|1|A|A|1618
2JL8|1|A|G|1619

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain 7

50S RIBOSOMAL PROTEIN L34

Chain W

50S RIBOSOMAL PROTEIN L22