HL_2JL8_055

3D structure

PDB id

2JL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 4 of 4). This file contains the 50S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

2JL8|1|A|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2JL8_055 not in the Motif Atlas

Geometric match to HL_4WF9_049

Geometric discrepancy: 0.1101

The information below is about HL_4WF9_049

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

2JL8|1|A|C|2248
2JL8|1|A|U|2249
2JL8|1|A|G|2250
2JL8|1|A|G|2251
2JL8|1|A|G|2252
2JL8|1|A|G|2253
2JL8|1|A|C|2254
2JL8|1|A|G|2255
2JL8|1|A|G|2256

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain 0

50S RIBOSOMAL PROTEIN L27

Chain Q

50S RIBOSOMAL PROTEIN L16